bio data WHIZ: DR OLGA BOTVINNIK - support women in SCIENCE, SPORTS, and LIFE - FIGHT SEXISM - READY PLAYER ONE (book)
Contact Information
- COMP BIOLOGIST: DR OLGA BOTVINNIK-DATA SCIENTIST
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www.OlgaBotvinnik.com
- COMPUTATIONAL BIOLOGIST: DR OLGA BOTVINNIK
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www.CompBio.tel
- "Towards a phylogeny of cell types" DR BOTVINNIK
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primetime.bluejeans.com/.../845c1ff7-3fec-4e01-...
- CAL Berkeley Berlin Vilnius - KAVLI - CRISPR BEARS
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www.CAL.tel
- bio data WHIZ: DR OLGA BOTVINNIK
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www.WHIZ.tel
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K-mers from RNA-seq profile
k-mers from each cell’s RNA-seq profile are randomly subsampled into a compressed representation called a “sketch” using document comparison algorithms of MinHash or HyperLogLog. For within-species comparison, the RNA sketches are sufficient, we translate the RNA k-mers into protein k-mers with 6-frame translation, discarding all protein k-mers containing stop codons.
U-M Computational Medicine
bio data WHIZ: DR OLGA BOTVINNIK speaking MARCH 20 @ 4 pm, Forum Hall, Palmer Commons, "Towards a phylogeny of cell types" U-M
Single-cell RNA-seq is a powerful technology for identifying novel and known cell types, however its power is limited to organisms with well-annotated genomes. We present a reference-free method to compare single cells both within and across species.
bio data WHIZ: DR OLGA BOTVINNIK
REAL-TIME bio data WHIZ:
DR OLGA BOTVINNIK -
BioInformatics Data Scientist
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